Built by ecommerce sellers

Ecommerce Tax Services for Multi-Channel Brands That Have Outgrown Generic Accountants

Business income tax. Personal tax filing. Year-round tax planning. One dedicated ecommerce CPA who knows Amazon, Shopify, and every channel in between.

No commitment. We’ll send a custom quote within 1 business day.

Trusted by Hundreds of eCommerce Brands Across Every Channel

$25M+

Sold on Amazon & Shopify ourselves

500+

eCommerce brands served

25+ yrs

CPA experience in ecommerce

1 Month

Free bookkeeping to get started

the problem

Most eCommerce Accountants Don't Understand How Multi-Channel Businesses Actually Work

Selling on one platform is complicated. Selling on three is a completely different level of complexity — and most accountants weren’t built for it.

They see Shopify revenue as income and Amazon payouts as deposits. They don’t know what an FBA reimbursement is, how to handle Etsy’s 1099-K, or why your wholesale margin looks nothing like your DTC margin. Every year, you hand them your records and hope for the best.

That's not an ecommerce CPA. That's a liability dressed up as a service.

“I switched to EcomBalance after my previous accountant miscategorized two years of Amazon seller fees. They don’t just file — they actually understand how ecommerce finances work. That’s rare. “

Rachel M.

Multi-Channel Brand Owner, Shopify + Amazon + Wholesale

our services

eCommerce Tax Services Built Around How You Actually Sell

Business Income Tax Filing:

Federal and state returns for your ecommerce business — filed correctly across all your channels. COGS, platform fees, ad spend, fulfillment, contractor payments, and inventory all handled by an ecommerce CPA who has seen every variation of the multi-channel P&L.

Personal Income Tax Filing:

Your personal return filed in full coordination with your business return — pass-through income, owner distributions, capital gains, and any equity events. One team with the complete picture means nothing gets missed and nothing gets double-counted.

Ongoing Tax Planning:

Year-round strategy, not a once-a-year scramble. Quarterly estimated tax payments, entity structure reviews, deduction planning timed around your peak revenue seasons (Q4 for most sellers), and proactive savings identification throughout the year.

multi-channel expertise

We Handle the Tax Complexity That Comes With Selling Everywhere

Sales Channel	Tax / Accounting Complexity	How EcomBalance Handles It
Shopify / Own Website	Revenue vs. payouts reconciliation, Shopify Payments fees, refunds, chargebacks, ad spend deductions	We reconcile Shopify payouts to actual revenue, categorize all platform and payment fees, and ensure ad spend (Meta, Google, TikTok) is fully deducted.
Amazon FBA / FBM	Seller fees, FBA storage fees, reimbursements, COGS, multi-warehouse inventory	We correctly categorize all Amazon seller fees, separate FBA reimbursements from income, and handle inventory valuation across fulfillment centers.
Etsy	1099-K reconciliation, Etsy fees, handmade/digital product COGS, multi-state exposure	We reconcile your Etsy 1099-K, categorize listing and transaction fees, and handle COGS correctly for product-based or digital sellers.
eBay	eBay managed payments, seller fees, returns, COGS for resellers	We manage eBay managed payments reconciliation, categorize fees, and handle COGS for resale businesses with varying acquisition costs.
TikTok Shop	TikTok Shop fees, creator affiliate commissions, fulfillment costs, new channel revenue recognition	TikTok Shop is new enough that most accountants have never seen it. We understand the fee structure and how to properly recognize revenue from creator-driven sales.
Wholesale / Traditional Retail	Different revenue recognition, net terms receivables, retail margin vs. DTC margin, B2B invoicing	Wholesale income is recognized differently than DTC. We manage net-terms receivables, ensure proper COGS allocation, and correctly reflect both channels in your financials.

How it works

From Messy
Multi-Channel Books to Tax-Ready Financials Here's How It Works

1

We start with a free review of your current books and channels.

We connect to your accounting software, review your current chart of accounts, and identify exactly what needs to be cleaned up across your sales channels before we can file accurately

2

Your dedicated ecommerce accountant learns your business.

We map every revenue stream, fee structure, and COGS source across all your channels — Shopify, Amazon, Etsy, eBay, TikTok Shop, or wholesale. Nothing is assumed. Everything is documented.

3

Clean monthly financials, delivered by the 15th.

Every month, your P&L, balance sheet, and cash flow statement arrive on time. Your books are tax-ready before tax season even starts — not assembled in a panic in April.

4

Your business and personal returns are filed together, accurately.

At year-end, your ecommerce CPA prepares both returns using 12 months of clean, complete books. No scrambling. No re-explaining your business. No surprises on the filing.

5

Year-round, we plan ahead — not just file.

Quarterly tax estimates, deduction planning, entity structure reviews, and proactive conversations before Q4 and other high-revenue periods. Tax planning is included, not an add-on.

Client Stories

What Multi-Channel Sellers Say About EcomBalance

Real results from real ecommerce businesses-aacross every channel, every size.

“The entire EcomBalance team have been a pleasure to work with. Having clarity on my numbers has been immensely valuable!”

Alex Schlinsky

“We struggled to find bookkeepers that truly understood our business. EcomBalance has been all of that and much more. Best in the business.”

Neils Olsen

“We were constantly behind on our books, so thankful for the EcomBalance Team that keeps us up to date! Great value for the services offered.”

Michael Sovie

“Highly recommended from an eCommerce company of 17 years. We’ve had a great experience thus far with Nathan and the team.”

Jared Mitchell

Who it’s for

Built for Multi-Channel eCommerce Brands at Every Stage

Whether you’re a 6-figure Shopify seller just getting your books straight, or an 8-figure operator selling across Shopify, Amazon, Etsy, and wholesale — our ecommerce tax services scale with you.

You're a great fit if...

We specialize in...

No commitment. We'll respond with a custom quote within 1 business day

Get a Pricing Quote for Ecommerce Tax Services

Prefer to talk first? Easy. Book a call directly and we’ll walk through your channels, your current setup, and exactly what we’d do for your business.

why ecombalance

Why Multi-Channel Sellers
Choose EcomBalance Over a Generic CPA

Feature	EcomBalance	Generic CPA / Firm
Understands ecommerce revenue reconciliation
Business + personal tax filing, coordinated		Sometimes
Amazon, Shopify, Etsy, eBay, TikTok Shop expertise
Wholesale & DTC margin tracking
Year-round tax planning (optional add on)		Sometimes
Built by eCommerce sellers — $25M+ sold ourselves
Dedicated Ecommerce CPA

What makes EcomBalance different from a regular accountant or CPA?

Most CPAs are generalists. EcomBalance works exclusively with ecommerce and online businesses — it’s all we do. Our team has sold $25M+ on Amazon and Shopify ourselves, so we understand the fee structures, the inventory complexity, and the multi-channel revenue reconciliation challenges that trip up generalist accountants every year.

Do you file my business taxes?

Yes. Business income tax filing is a core part of our ecommerce tax services. We prepare and file federal and state returns for your ecommerce business — whether you’re structured as an LLC, S-corp, C-corp, or sole proprietorship. Our filings are built on 12 months of clean bookkeeping.

Do you handle personal income taxes?

Yes, we offer personal income tax filing through our dedicated ecommerce CPA. For ecommerce business owners, your personal return is directly connected to your business return. We file both, together, so nothing falls through the gap between two separate firms.

I sell on multiple channels — Shopify, Amazon, Etsy, and wholesale. Can you handle all of them?

That’s exactly the complexity we were built for. We’ve built out systems for Shopify, Amazon, Etsy, eBay, TikTok Shop, and wholesale reconciliation. Adding a channel to your business doesn’t add confusion to your books.

What does ongoing tax planning include?

Tax planning means we work with you throughout the year — not just at filing time. Quarterly estimated tax payment calculations, entity structure reviews, deduction planning timed around peak revenue periods, and proactive conversations before major financial decisions.

What accounting software do you use?

We work with QuickBooks Online and Xero — the two platforms best suited for ecommerce businesses at scale. Both integrate directly with Shopify, Amazon, and other major ecommerce platforms to pull in transaction data automatically.

Do you handle sales tax?

At this time, sales tax compliance is not a service we offer directly. What we handle is income tax — business and personal — and year-round tax planning. If you mention it when we talk, we’ll make sure your situation is properly accounted for.

How much do ecommerce tax services cost?

Most ecommerce businesses start between $299–$599/month for combined bookkeeping and tax services. The fastest way to get an accurate number is to request a pricing quote — we’ll respond within one business day with a custom quote for your specific situation.

FAQ

Frequently Asked Questions

Stop Explaining Your Business to an Accountant Who Doesn't Understand eCommerce

You’ve built something real — multiple channels, real revenue, real complexity. Your taxes should be handled by someone who gets it. An ecommerce CPA who knows Amazon fees. A bookkeeper who speaks Shopify. A team that understands why your wholesale margin looks different from your DTC margin. All in one place.