Ebay QuickBooks Integration: How to Streamline Your Ecommerce Accounting


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We have seen several different successful eBay QuickBooks integration methods. It all depends on the tools you prefer and the functionalities you want. 


In this post, we’ll go over the integration options available to eBay store owners. We’ll also dive into a few different things to consider when choosing a method.


Understanding eBay QuickBooks Integration


The integration of eBay and QuickBooks refers to connecting your eBay seller account with your QuickBooks accounting software. This allows data to flow automatically between the two platforms. The point is to save you time and effort by making it easier to manage your finances. 


Benefits of Integrating eBay with QuickBooks Online


Integrating eBay with QuickBooks Online offers several key benefits:


  • Minimal manual data entry, almost eliminating the change of errors and saving a lot of valuable time.
  • Automatic data transfer reduces the risk of typos and other inconsistencies.
  • Simplified bookkeeping process with sales and accounting data organized in one place.
  • Enhanced reporting on business finances with combined overall business income and expense data in QuickBooks.
  • Efficient tax preparation facilitated by accurate and organized financial data.


Popular Tools and Platforms for Integration




Synder specializes in multi-currency management. It offers a more feature-rich solution compared to the built-in integration available in QuickBooks Online. Other key features include:


  • Automated data synchronization
  • Customizable inventory management
  • Automatic transaction Categorization
  • Duplicate detection and rollback functionality
  • Easy setup


Synder offers a free trial, but it has paid plans with varying features. Consider your budget and required functionality before committing.




ConnectBooks helps best with inventory management. Other key features include:


  • Two-way integration
  • Focus on data accuracy
  • Detailed reporting
  • Multiple marketplace support
  • Automatic transaction categorization
  • User-friendly interface




Amaka is a reputable option that features setup flexibility. Other key strengths include:


  • Free and paid plan
  • Focus on accuracy
  • Daily sales syncing
  • Historical data back-sync (paid plans)
  • Customization options (paid plans)


Step-by-Step Guide to Integrating eBay and QuickBooks


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Initial Setup with Synder


  1. Sign up for a Snyder account and navigate to the connection settings. If prompted, authorize Synder to access your QuickBooks data. Follow the on-screen instructions to establish the connection.
  2. Similarly, Synder will guide you through the process of connecting your eBay seller account. Grant Synder access to facilitate the data transfer.
  3. Specify how you want Snyder to map data fields from eBay to corresponding fields in QuickBooks. 
  4. Define your preferred syncing schedule based on your needs.
  5. Look at any other additional settings, like: 
    • Historical data back-sync 
    • Automatic transaction categorization
  6. Run a test sync with a small sample of data to ensure everything works as expected. Once satisfied with the test results, initiate the full data synchronization process.


Using ConnectBooks for Integration


  1. Create a ConnectBooks account and navigate to the connection settings.
  2. Authorize ConnectBooks to access your QuickBooks data and establish the connection. Then, grant access and connect your eBay seller account, too.
  3. Choose how you want ConnectBooks to map data fields from eBay to corresponding fields in QuickBooks. 
  4. Define your preferred syncing schedule based on your needs.
  5. Look into any advanced settings you want, like: 
    • Two-way inventory management 
    • Sales tax settings 
    • Custom reporting 
  6. After configuration, run a test sync with a small sample of data before syncing your entire dataset. Once satisfied, initiate the full data synchronization process.


Customizing Your Setup with Amaka


  1. Choose a plan that suits your customization needs. The free plans have limitations, while the paid plans offer more options.
  2. Log in to your Amaka account and navigate to the “Connections” section or find the option to add a new integration. 
  3. Find QuickBooks Online on the list of available platforms and select it. Follow the on-screen prompts to authorize Amaka to access QuickBooks, then grant the necessary permissions.
  4. Connect your eBay seller account as well, granting any needed permissions to facilitate the data transfer. 
  5. On the data mapping interface, define how you want data fields from eBay to be mapped to corresponding fields in QuickBooks. Make sure to match fields from eBay to their corresponding fields in QuickBooks invoices or sales receipts. 
  6. Specify how eBay payments are reflected in QuickBooks. Map them to income accounts or customer deposits based on your accounting practices.
  7. Define how you want various eBay fees to be categorized in QuickBooks. Map them to appropriate expense accounts.
  8. Choose how you want invoices for eBay sales to be generated in QuickBooks – a daily summary or individual invoices.
  9. Define the syncing frequency – daily syncs or specific days and times.
  10. Explore other customization options available to you, then test the integration with a small sample of data. Ensure everything matches, then sync your entire dataset.


Advanced Integration Features


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Handling Multi-Currency Transactions


Using multi-currency management tools for global ecommerce operations holds several benefits.


Improved Customer Experience


Customers can see product prices in their preferred currency, no matter where they are. This, plus familiar payment methods, eliminates confusion. They won’t be surprised by the charges at checkout, either. This builds trust and encourages them to complete purchases.


Enhanced Sales and Revenue


You can reach a wider audience by catering to international customers, significantly expanding your sales potential. Dynamic currency conversion gives you an edge with the ability to adjust prices based on exchange rates and local market conditions.


Streamlined Operations and Efficiency


Multi-currency management tools automate currency conversion to save time and minimize errors. You can also manage all your foreign currency transactions from a single platform to simplify accounting and reconciliation processes.


Reduced Costs and Risks


You can lock in exchange rates at favorable times to protect your profit margins from unfavorable currency fluctuations. Multi-currency tools can help you negotiate better foreign exchange rates with payment processors, too, saving you money on transaction fees.


Improved Reporting and Analysis


Access reports that reflect revenue and expenses in all relevant currencies for all global sales. Comply with international tax regulations with accurate foreign currency transaction records.


Automating Complex Workflows


Integration tools can automate various processes across different software applications. This saves you time and effort while improving accuracy. 


Ecommerce and Accounting


Get automatic invoices or sales orders in your eBay accounting software, eliminating manual data entry and reducing the risk of errors. Enjoy automatic inventory adjustments, too, once items are sold.


When you receive a payment through eBay, the integration can automatically reconcile the transaction to ensure your books are balanced.


Human Resources and Payroll


When the integration receives a new record in your HR software, it can automatically create a corresponding payroll record. If you use time tracking software, the integration can also automatically transfer this data to your payroll software, simplifying calculations.


Similarly, the integration can automatically sync employee expense reports from your expense management software to your accounting software. 


Challenges and Considerations


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Below are some common challenges you might encounter with eBay QuickBooks integration.


  1. Incorrectly mapping data fields can lead to inaccurate information transfer and discrepancies in your accounting records.
  2. Without two-way inventory sync, you might need to manually update inventory levels in both QuickBooks and eBay.
  3. The integration might not automatically handle returns and refunds, so you’ll need to create credit memos manually to reflect adjustments.
  4. Not all integration tools support multi-currency transactions, so international sellers will need additional tools or manual workarounds to manage transactions.
  5. Integrations aren’t perfect, so you need to regularly monitor data accuracy and reconcile accounts. 
  6. Granting third-party access to your eBay seller account and QuickBooks data potentially exposes sensitive information.
  7. Setting up integrations can involve multiple steps and configurations that can require technical knowledge.
  8. Paid integration plans add to your monthly expenses. 


Tips to Avoid these Pitfalls


Research and compare different integration tools based on your specific needs so you can choose the best one. Take advantage of free trials and run tests to see how things work.


Never fully rely on any integration but always review data regularly and reconcile accounts to identify and address any discrepancies.


Choose a reputable integration tool with strong security practices. On your end, regularly update your passwords, and take advantage of all other available security measures.




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Does integrating eBay with QuickBooks support multi-currency transactions?


QuickBooks Desktop supports multi-currency transactions, but native integration with eBay isn’t available. You will need to use a third-party app since QuickBooks won’t be able to handle it automatically.


How can I ensure data accuracy when using automated syncing tools?


Below are some key steps you can take:


  1. Before you begin syncing, make sure that the data in both source and destination systems is clean and consistent. This means identifying and removing all duplicates, inconsistencies, and inaccuracies. 
  2. Implement either real-time or scheduled data validation during the syncing process. Real-time validation ensures only valid and accurate data gets transferred. Scheduled checks aim to identify any discrepancies that might have slipped through.
  3. Automated syncing tools often rely on data mapping to match corresponding fields between systems. Make sure you double-check that the data was transferred correctly since formatting in complex data can cause errors.
  4. Regularly monitor the syncing process to check for errors or inconsistencies.]
  5. Conduct thorough testing before deploying any automated syncing tool in a live environment. Creating test data sets and simulating the syncing process, for example, can help you identify and address potential problems before they impact real data.


What should I do if I encounter data overload in QuickBooks due to frequent syncing?


Here are the steps you can take to address data overload caused by frequent syncing:


  1. Increasing the interval between syncs and check if this helps. You don’t need to sync too frequently if you don’t have a lot of changes.
  2. Check your tool for filter options so you can sync only the essential data.
  3. If you notice specific data points causing the overload, consider aggregating them before syncing. For instance, you can summarize daily or weekly sales figures instead of syncing every single sales transaction.
  4. Implement data archiving strategies to offload older data that’s no longer required day to day to reduce your data storage burden.
  5. If your current syncing tool is cumbersome, explore alternative solutions that can handle large data volumes better.
  6. If you’re using an older version of QuickBooks, consider upgrading for improved data handling capabilities and performance.


Are there any specific settings to consider for handling eBay managed payments in QuickBooks?


Here are a few key settings for eBay Managed Payments in QuickBooks:


Choosing a Syncing Method


QuickBooks Online offers built-in integration with eBay Managed Payments through the “Connect to eBay Managed Payments” app. From there, you can import your sales data in either:


  1. Individual View – Each sale recorded as a separate sales receipt.
  2. Summary View – All daily sales combined into a single sales receipt.


If you use QuickBooks Desktop or need more advanced syncing features, look into third-party apps that can offer the functionalities you need.


Setting Up a Clearing Account


We recommend creating a separate clearing account in QuickBooks specifically for eBay Managed Payments. This is like a staging area for your sales proceeds before transferring them to your main business bank account.


Matching Transactions


Software isn’t perfect, so do manual checks to make sure that your sales data aligns with the eBay payouts.


Categorizing Expenses


eBay Managed Payments might deduct various fees from your sales that you’ll need to categorize as expenses in QuickBooks. Common expense categories include eBay Selling Fees, Payment Processing Fees, and Shipping Fees.


Reconciling Bank Statements


Regularly reconcile your bank statements with the transactions in your clearing account so that all deposits and withdrawals show accurately.


How do I handle returns and refunds in QuickBooks when integrated with eBay?


The exact process for handling eBay returns and refunds in QuickBooks depends on whether you’re using built-in integration or a third-party app. Aside from that, the general steps involve:


  1. Initiate the return process through eBay. 
  2. Record the refund in QuickBooks: 
    • With QuickBooks Online and the built-in integration, you’ll need to manually create a credit memo in QuickBooks. This should reflect the refunded amount and the corresponding item details and original sale reference. 
    • When using a third-party integration app, check if it automatically creates credit memos in QuickBooks based on refund activity in eBay.
  3. If sales tax was collected on the original sale, you might need to adjust the sales tax liability in QuickBooks. Because this process can vary depending on your specific tax regulations, we recommend consulting your accountant for guidance.
  4. Reconcile your bank statements with the transactions in QuickBooks to match the deduction from your eBay Managed Payments account. Make sure that the credit memo is reflected accurately.


What Is EcomBalance? 



EcomBalance is a monthly bookkeeping service specialized for eCommerce companies selling on Amazon, Shopify, Ebay, Etsy, WooCommerce, & other eCommerce channels.


We take monthly bookkeeping off your plate and deliver you your financial statements by the 15th or 20th of each month.


You’ll have your Profit and Loss Statement, Balance Sheet, and Cash Flow Statement ready for analysis each month so you and your business partners can make better business decisions.


Interested in learning more? Schedule a call with our CEO, Nathan Hirsch.


And here’s some free resources:




When you apply the right eBay QuickBooks integration, you can take advantage of a significant boost from streamlined operations. There’s no one perfect solution, so you need to look into which system and method will work best for your business.

Want bookkeeping off your plate? We’ve got you! Get started, Speak w/ a Founder, or Schedule a Callback

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Julia Valdez

Julia Valdez is Freelance Writer and Agency Owner. She regularly writes on topics related to Business Finances, Growth, Hiring, Entrepreneurship, and more.

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